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2021

  1. Lab of environmental epigenetics
  2. Publications

 

 

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network
Year: 2021 DOI:10.1038/s41467-021-23143-7
Authors: Mathys Grapotte , Manu Saraswat , Chloé Bessière, Christophe Menichelli , Jordan A Ramilowski , Jessica Severin, Yoshihide Hayashizaki , Masayoshi Itoh, Michihira Tagami , Mitsuyoshi Murata , Miki Kojima-Ishiyama, Shohei Noma , Shuhei Noguchi , Takeya Kasukawa, Akira Hasegawa , Harukazu Suzuki, Hiromi Nishiyori-Sueki , Martin C Frith, FANTOM consortium; Clément Chatelain , Piero Carninci, Michiel J L de Hoon , Wyeth W Wasserman, Laurent Bréhélin , Charles-Henri Lecellier
  • PMID: 34078885
    •  
  • PMCID: PMC8172540
RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions
Year: 2020 DOI:10.1038/s41467-020-14337-6
Authors: Bonetti A, Agostini F, Suzuki AM, Hashimoto K, Pascarella G, Gimenez J, Roos L, Nash AJ,, Ghilotti M, Cameron CJF,, Valentine M, Medvedeva YA, Noguchi S,, Agirre E, Kashi K, Samudyata, Luginbühl J,, Cazzoli R, Agrawal S, Luscombe NM,, Blanchette M, Kasukawa T, Hoon M, Arner E,, Lenhard B, Plessy C, Castelo-Branco G,, Orlando V, Carninci P.
 Nat Commun. 2020 Feb 24;11(1):1018. doi: 10.1038/s41467-020-14337-6.PMID: 32094342
Optogenetic Stimulation of Prelimbic Pyramidal Neurons Maintains Fear Memories and Modulates Amygdala Pyramidal Neuron Transcriptome
Year: 2021
Authors: Daniela Laricchiuta, Giuseppe Sciamanna, Juliette Gimenez, Andrea Termine, Carlo Fabrizio, Silvia Caioli, Francesca Balsamo, Anna Panuccio, Marco De Bardi, Luana Saba, Noemi Passarello, Debora Cutuli, Anna Mattioni, Cristina Zona, Valerio Orlando, Laura Petrosini

/ 2021 Jan 15;22(2):810./doi: 10.3390/ijms22020810.

New insights into the functional role of retrotransposon dynamics in mammalian somatic cells
Year: 2021 DOI:10.1007/s00018-021-03851-5
Authors: Mangiavacchi A, Liu P, Della Valle F, Orlando V.
Cell Mol Life Sci. 2021 Jul;78(13):5245-5256. doi: 10.1007/s00018-021-03851-5. Epub 2021 May 14.PMID: 33990851
Malat-1-PRC2-EZH1 interaction supports adaptive oxidative stress-dependent epigenome remodeling in skeletal myotubes
Year: 2021 DOI:10.1038/s41419-021-04082-z
Authors: Nadine Hosny El Said, Francesco Della Valle, Peng Liu, Andreu Paytuví-Gallart, Sabir Adroub, Juliette Gimenez & Valerio Orlando
Ago1 controls myogenic differentiation by regulating eRNA-mediated CBP-guided epigenome reprogramming
Year: 2021 DOI:10.1016/j.celrep.2021.110066.
Authors: Fallatah B, Shuaib M, Adroub S, Paytuví-Gallart A, Della Valle F, Nadeef S, Lanzuolo C, Orlando V.
2021 Nov 30;37(9):110066./ doi: 10.1016/j.celrep.2021.110066.

 

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