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2020

  1. Lab of environmental epigenetics
  2. Publications

 

 

RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions
Year: 2020 DOI:10.1038/s41467-020-14337-6
Authors: Bonetti A, Agostini F, Suzuki AM, Hashimoto K, Pascarella G, Gimenez J, Roos L, Nash AJ,, Ghilotti M, Cameron CJF,, Valentine M, Medvedeva YA, Noguchi S,, Agirre E, Kashi K, Samudyata, Luginbühl J,, Cazzoli R, Agrawal S, Luscombe NM,, Blanchette M, Kasukawa T, Hoon M, Arner E,, Lenhard B, Plessy C, Castelo-Branco G,, Orlando V, Carninci P.
 Nat Commun. 2020 Feb 24;11(1):1018. doi: 10.1038/s41467-020-14337-6.PMID: 32094342
Functional annotation of human long noncoding RNAs via molecular phenotyping
Year: 2020 DOI:10.1101/gr.254219.119
Authors: Ramilowski JA, Yip CW, Agrawal S,, Chang JC, Ciani Y, Kulakovskiy IV, Mendez M, Ooi JLC,, Ouyang JF, Parkinson N, Petri A, Roos L,, Severin J, Yasuzawa K, Abugessaisa I,, Akalin A, Antonov IV, Arner E,, Bonetti A, Bono H, Borsari B, Brombacher F,, Cameron CJ, Cannistraci CV, Cardenas R, Cardon M,, Chang H, Dostie J, Ducoli L, Favorov A, Fort A,, Garrido D, Gil N, Gimenez J,, Guler R, Handoko L, Harshbarger J,, Hasegawa A, Hasegawa Y, Hashimoto K,, Hayatsu N, Heutink P, Hirose T,, Imada EL, Itoh M, Kaczkowski B, Kanhere A,, Kawabata E, Kawaji H, Kawashima T,, Kelly ST, Kojima M, Kondo N, Koseki H, Kouno T,, Kratz A, Kurowska-Stolarska M, Kwon ATJ,, Leek J, Lennartsson A, Lizio M, López-Redondo F,, Luginbühl J, Maeda S, Makeev VJ, Marchionni L,, Medvedeva YA, Minoda A, Müller F, Muñoz-Aguirre M,, Murata M, Nishiyori H, Nitta KR,, Noguchi S, Noro Y, Nurtdinov R,, Okazaki Y, Orlando V,, Please refer to the link to find the other authors
Genome Res. 2020 Jul;30(7):1060-1072. doi: 10.1101/gr.254219.119. Epub 2020 Jul 27.PMID: 32718982 
Optogenetic Stimulation of Prelimbic Pyramidal Neurons Maintains Fear Memories and Modulates Amygdala Pyramidal Neuron Transcriptome
Year: 2021
Authors: Daniela Laricchiuta, Giuseppe Sciamanna, Juliette Gimenez, Andrea Termine, Carlo Fabrizio, Silvia Caioli, Francesca Balsamo, Anna Panuccio, Marco De Bardi, Luana Saba, Noemi Passarello, Debora Cutuli, Anna Mattioni, Cristina Zona, Valerio Orlando, Laura Petrosini

/ 2021 Jan 15;22(2):810./doi: 10.3390/ijms22020810.

Transdifferentiation of Mouse Embryonic Fibroblasts into Dopaminergic Neurons Reactivates LINE-1 Repetitive Elements
Year: 2020 DOI:https://doi.org/10.1016/j.stemcr.2019.12.002
Authors: Francesco Della Valle, Manjula P.Thimma, Massimiliano Caiazzo, Salvatore Pulcrano, MirkoCelii, Sabir A.Adroub, Gregorio Alanis-Lobato, Vania Broccoli, Valerio Orlando
Stem Cell Reports (2019), https://doi.org/10.1016/j.stemcr.2019.12.002
  • LINE-1 elements
  • cell transdifferentiation
  • cell plasticity
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