Multimodal interactions drive chromatin phase separation and compaction

by Tina Ukmar-Godec , Maria-Sol Cima-Omori, Zhadyra Yerkesh , Karthik Eswara, Taekyung Yu, , Reshma Ramesh , Gwladys Riviere , Alain Ibanez de Opakua , Wolfgang Fischle , Markus Zweckstetter
Year: 2023 DOI: 10.1073/pnas.2308858120

Extra Information

PMCID: PMC10723116

Abstract

Gene silencing is intimately connected to DNA condensation and the formation of transcriptionally inactive heterochromatin by Heterochromatin Protein 1α (HP1α). Because heterochromatin foci are dynamic and HP1α can promote liquid-liquid phase separation, HP1α-mediated phase separation has been proposed as a mechanism of chromatin compaction. The molecular basis of HP1α-driven phase separation and chromatin compaction and the associated regulation by trimethylation of lysine 9 in histone 3 (H3K9me3), which is the hallmark of constitutive heterochromatin, is however largely unknown. Using a combination of chromatin compaction and phase separation assays, site-directed mutagenesis, and NMR-based interaction analysis, we show that human HP1α can compact chromatin in the absence of liquid-liquid phase separation. We further demonstrate that H3K9-trimethylation promotes compaction of chromatin arrays through multimodal interactions. The results provide molecular insights into HP1α-mediated chromatin compaction and thus into the role of human HP1α in the regulation of gene silencing.